SNP Profiles of NA 26 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	TT	CC	GG	GG	TT	AC	AG	GG	AG	CT	AC	GG
1._RUQ_1230	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
2._NA_26	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
3._NA_26	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
4._NA_26	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
5._NA_26	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
6._NA_26	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
7._RUQ_1230	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
8._GC-04-021-2-03	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
9._GC-04-021-2-03	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
10._GC-04-021-2-03	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
11._GC-04-021-2-03	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
12._GC-04-021-2-03	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
13._RUQ_1230	_	_	_	_	_	_	_	AC	_	_	AG	_	_	_
14._NA_26	_	_	_	_	_	_	_	CC	_	_	AG	_	_	_
15._RUQ_1230	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG
16._MITC-000034	_	_	_	_	_	_	_	AC	_	_	AG	_	_	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AC	CC	CC	AA	GG	AT	AC	CC	TT	AG	CC	AA
1._RUQ_1230	_	_	_	_	CC	_	GG	_	AC	CC	_	_	_	_
2._NA_26	_	_	_	_	CC	_	GG	_	AC	_	_	_	_	AA
3._NA_26	_	_	_	_	CC	_	GG	_	AC	_	_	_	_	AA
4._NA_26	_	_	_	_	CC	_	GG	_	AC	_	_	_	_	AA
5._NA_26	_	_	_	_	CC	_	GG	_	AC	_	_	_	_	AA
6._NA_26	_	_	_	_	CC	_	GG	_	AC	_	_	_	_	AA
7._RUQ_1230	_	_	_	_	CC	_	GG	_	AC	_	_	_	_	AA
8._GC-04-021-2-03	_	_	_	_	CC	_	GG	_	AC	CC	_	_	_	AA
9._GC-04-021-2-03	_	_	_	_	CC	_	GG	_	AC	CC	_	_	_	AA
10._GC-04-021-2-03	_	_	_	_	CC	_	GG	_	AC	CC	_	_	_	AA
11._GC-04-021-2-03	_	_	_	_	CC	_	GG	_	AC	CC	_	_	_	AA
12._GC-04-021-2-03	_	_	_	_	CC	_	GG	_	AC	CC	_	_	_	AA
13._RUQ_1230	_	_	_	_	_	_	GG	_	AC	CC	_	_	_	_
14._NA_26	_	_	_	_	AC	_	GG	_	AC	_	_	_	_	AA
15._RUQ_1230	_	_	_	_	CC	_	GG	_	AC	GG	_	_	_	_
16._MITC-000034	_	_	_	_	CC	_	GG	_	AC	GG	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	GG	GG	TT	TT	CC	AT	TT	CC	GG	CC	AG	CC
1._RUQ_1230	_	TT	GG	GG	_	_	CC	_	_	CC	-	_	AG	CC
2._NA_26	_	_	GG	_	_	_	_	_	_	CC	_	_	AG	_
3._NA_26	_	_	GG	_	_	_	_	_	_	CC	_	_	AG	_
4._NA_26	_	_	GG	_	_	_	_	_	_	CC	_	_	AG	_
5._NA_26	_	_	GG	_	_	_	_	_	_	CC	_	_	AG	_
6._NA_26	_	_	GG	_	_	_	_	_	_	CC	_	_	AG	_
7._RUQ_1230	_	_	GG	_	_	_	_	_	_	CC	_	_	AG	_
8._GC-04-021-2-03	_	CC	GG	GG	_	_	CC	_	GG	CC	GG	_	AG	CC
9._GC-04-021-2-03	_	CC	GG	GG	_	_	CC	_	GG	CC	GG	_	AG	CC
10._GC-04-021-2-03	_	CC	GG	GG	_	_	CC	_	GG	CC	GG	_	AG	CC
11._GC-04-021-2-03	_	CC	GG	GG	_	_	CC	_	GG	CC	GG	_	AG	CC
12._GC-04-021-2-03	_	CC	GG	GG	_	_	CC	_	GG	CC	GG	_	AG	CC
13._RUQ_1230	_	_	_	_	_	_	_	_	_	GG	_	_	_	_
14._NA_26	_	_	GG	_	_	_	_	_	_	CC	_	_	AA	_
15._RUQ_1230	_	_	CC	GG	_	_	CC	_	CC	GG	GG	_	AG	_
16._MITC-000034	_	_	CC	GG	_	_	CC	_	CC	GG	GG	_	AG	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	CC	AG	TT	CC	GG	AA	TT	GG	AT	AG	GG	CG
1._RUQ_1230	_	_	_	_	_	_	_	_	TT	_	_	_	_	CG
2._NA_26	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
3._NA_26	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
4._NA_26	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
5._NA_26	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
6._NA_26	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
7._RUQ_1230	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
8._GC-04-021-2-03	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
9._GC-04-021-2-03	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
10._GC-04-021-2-03	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
11._GC-04-021-2-03	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
12._GC-04-021-2-03	_	_	_	AG	_	CC	_	_	TT	_	_	_	_	CG
13._RUQ_1230	_	_	_	_	_	_	_	_	_	_	_	_	_	CG
14._NA_26	_	_	_	GG	_	CC	_	_	GT	_	_	_	_	CG
15._RUQ_1230	_	_	_	AG	_	_	_	_	AA	_	_	_	_	CG
16._MITC-000034	_	_	_	AG	_	_	_	_	AA	_	_	_	_	CG

	57	58
_Input profile	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1230	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._NA_26	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._NA_26	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._NA_26	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._NA_26	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._NA_26	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_1230	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-04-021-2-03	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-021-2-03	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-021-2-03	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-021-2-03	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-021-2-03	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_1230	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._NA_26	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._RUQ_1230	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._MITC-000034	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: NA_26 RUQ_1230

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._NA_26 RUQ_1230

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._NA_26

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4203 4 > FP

Dapeng Zhang, 2016

3._NA_26

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4203 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._NA_26

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4203 6 > FP

Dapeng Zhang, 2016

5._NA_26

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4203 7 > FP

Dapeng Zhang, 2016

6._NA_26

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4203 8 > FP

Dapeng Zhang, 2016

7._NA_26 RUQ_1230

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._NA_26 GC-04-021-2-03

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

9._NA_26 GC-04-021-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

10._NA_26 GC-04-021-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

11._NA_26 GC-04-021-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._NA_26 GC-04-021-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._NA_26 RUQ_1230

85.7 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

14._NA_26

80.8 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E352 T5

Dapeng Zhang, 2016

15._NA_26 RUQ_1230

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._NA_26 MITC-000034

70.6 %
17 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP189	10	TcSNP194
11	TcSNP230	12	TcSNP290	13	TcSNP305	14	TcSNP329	15	TcSNP363
16	TcSNP421	17	TcSNP519	18	TcSNP522	19	TcSNP529	20	TcSNP546
21	TcSNP577	22	TcSNP589	23	TcSNP591	24	TcSNP602	25	TcSNP640
26	TcSNP642	27	TcSNP644	28	TcSNP645	29	TcSNP660	30	TcSNP702
31	TcSNP723	32	TcSNP731	33	TcSNP739	34	TcSNP800	35	TcSNP823
36	TcSNP835	37	TcSNP836	38	TcSNP872	39	TcSNP899	40	TcSNP945
41	TcSNP998	42	TcSNP999	43	TcSNP1010	44	TcSNP1019	45	TcSNP1053
46	TcSNP1062	47	TcSNP1112	48	TcSNP1144	49	TcSNP1205	50	TcSNP1230
51	TcSNP1253	52	TcSNP1275	53	TcSNP1293	54	TcSNP1401	55	TcSNP1404
56	TcSNP1458	57	TcSNP1524	58	TcSNP1527